I agree with you 100%. However, once it occurs, it seems to keep happening. It probably messes up the syncronizers or gears once it happens. The key, I believe, is to never have a lazy shift. My mini floorboards actually assist me in providind more positive shifting because they move my foot foreward, closer to the shifter which reduces the amount of movement required.
Never had an issue with the OD lights but did have TPMS system light problems on my 2012 Wing. Since we don't have TPMS on the F6B, I can check that potential problem off the list.